miRBase entry: ptc-MIR162a

Stem-loop ptc-MIR162a


Accession
MI0002209
Description
Populus trichocarpa ptc-MIR162a precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
2 open access papers mention ptc-MIR162a
(12 sentences)

Sequence

ugggaagacacuggaggcagcgguucaucgaucucuuccuggccaauuuuuuguuuagcacgaaaaacaugaaccgaUCGAUAAACCUCUGCAUCCAGcgcuuccuu
.((((((.(.(((((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).)))).))))).))))))).

Structure
u      a a     g    c    c       uc   c  gccaa        u 
 gggaag c cugga gcag gguu aucgauc  uuc ug     uuuuuugu u
 |||||| | ||||| |||| |||| |||||||  ||| ||     |||||||| a
 uccuuc g GACCU CGUC CCAA UAGCUag  aag ac     aaaaagca g
u      - c     A    U    A       cc   u  -----        c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000348.2: 5079325-5079431 [+]

Database links

Mature ptc-miR162a

Accession MIMAT0001915
Description Populus trichocarpa ptc-miR162a mature miRNA
Sequence 78 - UCGAUAAACCUCUGCAUCCAG - 98
Evidence experimental
cloned [1]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  3. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203