miRBase entry: ptc-MIR164a

Stem-loop ptc-MIR164a


Accession
MI0002212
Description
Populus trichocarpa ptc-MIR164a precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
9 open access papers mention ptc-MIR164a
(42 sentences)

Sequence

gguuccuugcUGGAGAAGCAGGGCACGUGCAaaauccugaugaagugcuuacacuuugcacgcgcucuucuucuccaacacgggc
...(((.((.((((((((.(((((.(((((((...........((((....))))))))))).))))).)))))))).)).))).

Structure
ggu   u  c        C     A       aauccugauga    c 
   ucc ug UGGAGAAG AGGGC CGUGCAa           agug u
   ||| || |||||||| ||||| |||||||           ||||  
   ggg ac accucuuc ucucg gcacguu           ucac u
--c   c  a        u     c       -----------    a 


Annotation confidence Not enough data
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Genome context
CM000338.2: 16570527-16570611 [+]

Database links

Mature ptc-miR164a

Accession MIMAT0001918
Description Populus trichocarpa ptc-miR164a mature miRNA
Sequence 11 - UGGAGAAGCAGGGCACGUGCA - 31
Evidence experimental
cloned [1]

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203