miRBase entry: ptc-MIR164b

Stem-loop ptc-MIR164b


Accession
MI0002213
Description
Populus trichocarpa ptc-MIR164b precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
8 open access papers mention ptc-MIR164b
(38 sentences)

Sequence

gugagcaagaUGGAGAAGCAGGGCACGUGCAcuacuaacucaugcacacagagagggagacgcauuucuugcuggaguuacgaguuacgacucuuaccuacuauugauuuuguuagcuccagugaguuaguuauucaugugccugucuuccucaucaugauc
.....((.(((((.((((..(((((((((....((((((((...........((((((......))))))((((((((((((((........................)))).))))))))))))))))))....)))))))))..)))).))))).))...

Structure
gugag  a     A    CA         CAcu        augcacacagagagggagacgcauuucuu          -    uuacgacucuu 
     ca gaUGG GAAG  GGGCACGUG    acuaacuc                             gcuggaguua cgag           a
     || ||||| ||||  |||||||||    ||||||||                             |||||||||| ||||            
     gu cuacu cuuc  uccguguac    ugauugag                             ugaccucgau guuu           c
--cua  a     c    ug         uuau        -----------------------------          u    uaguuaucauc 


Annotation confidence Not enough data
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Genome context
CM000342.2: 8032134-8032295 [+]

Database links

Mature ptc-miR164b

Accession MIMAT0001919
Description Populus trichocarpa ptc-miR164b mature miRNA
Sequence 11 - UGGAGAAGCAGGGCACGUGCA - 31
Evidence experimental
cloned [1]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  3. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203