Stem-loop ptc-MIR164c

Accession

MI0002214

Description

Populus trichocarpa ptc-MIR164c precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

8 open access papers mention ptc-MIR164c
(39 sentences)

Sequence

uagcucuugcUGGAGAAGCAGGGCACGUGCAagcucucuccucaggcuuuccuugcacgugcuccccuucuccaacaugggu
..((((.((.((((((((..(((((((((((((......((...)).....)))))))))))))..)))))))).)).))))

Structure

ua    u  c        CA             cucucu  u 
  gcuc ug UGGAGAAG  GGGCACGUGCAag      cc  
  |||| || ||||||||  |||||||||||||      || c
  uggg ac accucuuc  cucgugcacguuc      gg  
--    u  a        cc             -cuuuc  a 

Annotation confidence Not enough data

Genome context

CM000349.2: 945053-945134 [-]

Mature ptc-miR164c

• Accession: MIMAT0001920
• Description: Populus trichocarpa ptc-miR164c mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203