miRBase entry: ptc-MIR166d

Stem-loop ptc-MIR166d


Accession
MI0002221
Description
Populus trichocarpa ptc-MIR166d precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
6 open access papers mention ptc-MIR166d
(23 sentences)

Sequence

cgugaguugaggggaauguuggcuggcucgaagcuuaagcaaagaguuuucucucaagaaacaacuguuaaggcuUCGGACCAGGCUUCAUUCCCCucaaccaau
..((.(((((((((((((..(.((((.(((((((((.((((....(((((.......)))))...)))).))))))))).)))).)..)))))))))))))))..

Structure
cg  a             uu g    c         a    aaga     cu 
  ug guugaggggaaug  g cugg ucgaagcuu agca    guuuu  c
  || |||||||||||||  | |||| ||||||||| ||||    |||||  u
  ac caacuCCCCUUAC  C GACC GGCUucgga uugu    caaag  c
ua  -             UU G    A         a    -caa     aa 


Annotation confidence Not enough data
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Genome context
CM000341.2: 4841691-4841795 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR166d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR166d

Accession MIMAT0001927
Description Populus trichocarpa ptc-miR166d mature miRNA
Sequence 76 - UCGGACCAGGCUUCAUUCCCC - 96
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604