Stem-loop ptc-MIR166e

Accession

MI0002222

Description

Populus trichocarpa ptc-MIR166e precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention ptc-MIR166e
(23 sentences)

Sequence

uaacuguugaggggauugucgucugguucgaugucauucaugagaagcucaaacauaaacguaauauugaaugauuUCGGACCAGGCUUCAUUCCCCccaacaaug
....(((((.(((((.((..(((((((((((.((((((((((((...))))................)))))))).)))))))))))..)).))))).)))))...

Structure

uaac     a     u  uc           u        ----------------    a 
    uguug gggga ug  gucugguucga gucauuca                ugag  
    ||||| ||||| ||  ||||||||||| ||||||||                |||| a
    acaac CCCCU AC  CGGACCAGGCU uaguaagu                acuc  
-gua     c     U  UU           u        uauaaugcaaauacaa    g 

Annotation confidence Not enough data

Genome context

CM000341.2: 22785312-22785417 [-]

Mature ptc-miR166e

• Accession: MIMAT0001928
• Description: Populus trichocarpa ptc-miR166e mature miRNA
• Sequence: 77 - UCGGACCAGGCUUCAUUCCCC - 97
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604