Stem-loop ptc-MIR166g

Accession

MI0002224

Description

Populus trichocarpa ptc-MIR166g precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention ptc-MIR166g
(23 sentences)

Sequence

acacaguugaggggaaugcugucugguucgagaccauucaccugaagcgcacgcauucaucuuuugagugaucUCGGACCAGGCUUCAUUCCCCccaacucaa
....(((((.((((((((..(((((((((((((.((((((..((((((....)).)))).....)))))).)))))))))))))..)))))))).)))))...

Structure

acac     a        cu             c      ---cc    -  g 
    aguug ggggaaug  gucugguucgaga cauuca     ugaa gc c
    ||||| ||||||||  ||||||||||||| ||||||     |||| ||  
    ucaac CCCCUUAC  CGGACCAGGCUcu gugagu     acuu cg a
-aac     c        UU             a      uuucu    a  c 

Annotation confidence Not enough data

Genome context

CM000344.2: 10886852-10886954 [-]

Mature ptc-miR166g

• Accession: MIMAT0001930
• Description: Populus trichocarpa ptc-miR166g mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604