miRBase entry: ptc-MIR166l

Stem-loop ptc-MIR166l


Accession
MI0002229
Description
Populus trichocarpa ptc-MIR166l precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
6 open access papers mention ptc-MIR166l
(23 sentences)

Sequence

uaacuuuuguggugaauguugucugguucaaggcauggccaccacaucucuuggugaauauauguccUCGGACCAGGCUUCAUUCCCCucaauuaau
......(((.((.(((((..(((((((((.(((((((..(((((.......)))))....)))).))).)))))))))..))))).)).))).....

Structure
uaacuu   u  u     uu         a   -    --gc     ca 
      uug gg gaaug  gucugguuc agg caug    cacca  u
      ||| || |||||  ||||||||| ||| ||||    |||||  c
      aac CC CUUAC  CGGACCAGG Ucc guau    guggu  u
-uaauu   u  C     UU         C   u    auaa     uc 


Annotation confidence Not enough data
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Genome context
CM000351.2: 541777-541873 [-]

Database links

Mature ptc-miR166l

Accession MIMAT0001935
Description Populus trichocarpa ptc-miR166l mature miRNA
Sequence 68 - UCGGACCAGGCUUCAUUCCCC - 88
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604