miRBase entry: ptc-MIR166p

Stem-loop ptc-MIR166p


Accession
MI0002233
Description
Populus trichocarpa ptc-MIR166p precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
6 open access papers mention ptc-MIR166p
(23 sentences)

Sequence

uaagguugagaggaacgcugucugggucgaggucauggaggccaugauuauacauaaauggcauuaucugaugacagcccagauaaucgaugcaccugucuugaaccuaaaugauucUCGGACCAGGCUCCAUUCCUUccaaccau
...(((((.((((((.(..((((((..(((((((((..(((((((............))))).(((((((.........)))))))((((.((....)).))))..))..)))).)))))..))))))..).)))))).)))))..

Structure
uaa     a      c cu      gu     -    gg  gccaugauuauacauaaauggca       aug 
   gguug gaggaa g  gucugg  cgagg ucau  ag                       uuaucug   a
   ||||| |||||| |  ||||||  ||||| ||||  ||                       |||||||   c
   ccaac UUCCUU C  CGGACC  GCUcu agua  uc                       aauagac   a
-ua     c      A CU      AG     u    aa  ---caaguucuguccacguagcu       ccg 


Annotation confidence Not enough data
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Genome context
CM000341.2: 4841446-4841591 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR166p
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR166p

Accession MIMAT0001939
Description Populus trichocarpa ptc-miR166p mature miRNA
Sequence 118 - UCGGACCAGGCUCCAUUCCUU - 138
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604