miRBase entry: ptc-MIR166q

Stem-loop ptc-MIR166q


Accession
MI0002234
Description
Populus trichocarpa ptc-MIR166q precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
6 open access papers mention ptc-MIR166q
(23 sentences)

Sequence

uuagguugagaggaauguugucuggcucgaggucauugaggccaugauuauacagacauggcauuaccugaugacagccgagaaaauucaaagucuguguguaucuuguaccucgaugauucUCGGACCAGGCUUCAUUCCUUccaacaaa
....((((.((((((((..((((((.(((((((((((((((.((.((((((((((((..(((..............)))((......))...))))))))).))).))..))))))))).)))))).))))))..)))))))).))))...

Structure
uuag    a        uu      c      -         -c  u   -         -----------au   auuacc 
    guug gaggaaug  gucugg ucgagg ucauugagg  ca gau uauacagac             ggc      u
    |||| ||||||||  |||||| |||||| |||||||||  || ||| |||||||||             |||       
    caac UUCCUUAC  CGGACC GGCUcu aguagcucc  gu cua gugugucug             ccg      g
-aaa    c        UU      A      u         au  u   u         aaacuuaaaagag   acagua 


Annotation confidence Not enough data
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Genome context
CM000343.2: 3116836-3116986 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR166q
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR166q

Accession MIMAT0001940
Description Populus trichocarpa ptc-miR166q mature miRNA
Sequence 123 - UCGGACCAGGCUUCAUUCCUU - 143
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604