miRBase entry: ptc-MIR169ae

Stem-loop ptc-MIR169ae


Accession
MI0002250
Description
Populus trichocarpa ptc-MIR169ae precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
9 open access papers mention ptc-MIR169ae
(12 sentences)

Sequence

cuuguuuggUAGCCAAGGACGACUUGCCCAccaccaucuuaguuggguccaauauauuacugggcaccuuccauuugguuuugggcaagcaccuuggcuagcugaca
..((((.(.(((((((((..(.((((((((..((((.....(..(((((((.........))))).))..)....))))..))))))))).))))))))).).))))

Structure
cu    u g         AC A        cc    ucuua uu  -     aua 
  uguu g UAGCCAAGG  G CUUGCCCA  acca     g  gg gucca   u
  |||| | |||||||||  | ||||||||  ||||     |  || |||||   a
  acag c aucgguucc  c gaacgggu  uggu     c  cc cgggu   u
--    u g         -a -        uu    -uuac uu  a     cau 


Annotation confidence Not enough data
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Genome context
CM000346.2: 7227918-7228024 [+]

Database links

Mature ptc-miR169ae

Accession MIMAT0001956
Description Populus trichocarpa ptc-miR169ae mature miRNA
Sequence 10 - UAGCCAAGGACGACUUGCCCA - 30
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604