Stem-loop ptc-MIR169d

Accession

MI0002254

Description

Populus trichocarpa ptc-MIR169d precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

9 open access papers mention ptc-MIR169d
(12 sentences)

Sequence

gagucgaaugCAGCCAAGGAUGACUUGCCGGcauuuccuccuaaguagcgagcccggcaaggcuucuauuuggcacgcccggccggcggguuguccuuggcuauauuuggu
...(((((((.(((((((((((((((((((((........((((((((.(((((......)))))))))))))........))))))))))))))))))))).))))))).

Structure

gag       C                     auuuccuc        c     cg 
   ucgaaug AGCCAAGGAUGACUUGCCGGc        cuaaguag gagcc  g
   ||||||| |||||||||||||||||||||        |||||||| |||||   
   gguuuau ucgguuccuguugggcggccg        gguuuauc uucgg  c
--u       a                     gcccgcac        -     aa 

Annotation confidence Not enough data

Genome context

CM000342.2: 5569290-5569400 [-]

Mature ptc-miR169d

• Accession: MIMAT0001960
• Description: Populus trichocarpa ptc-miR169d mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604