Accession
MI0002261
Description
Populus trichocarpa
ptc-MIR169k precursor miRNA
Literature search
9 open access papers mention ptc-MIR169k
(13 sentences)
(13 sentences)
Sequence
3553
reads,
59.0
reads per million, 9 experiments
ucuuguuuggUAGCCAAGGAUGACUUGCCUGuagccucccucggauucaugaacacgagcauuuauguggugcucaaaagaaaaggagagaaugaucccagcuggcagcgacaaggucaauccauugaaguagcgagaagcaggugauuuauagcuagaauccacaagagguucccAGCAAGUGUCCUUGGCUAACGagacgg
...(((((.((((((((((((.((((((..(.((((((....(((((((((((((((((((((.....))))))).........((.((......))))..((.((.((..(((((.....)).)))..)).)).))......))).))))).....))))))....)))))).)..)))))))))))))))).)).))))).
...(((((.((((((((((((.((((((..(.((((((....(((((((((((((((((((((.....))))))).........((.((......))))..((.((.((..(((((.....)).)))..)).)).))......))).))))).....))))))....)))))).)..)))))))))))))))).)).))))).
Structure
ucu g - G CU u ccuc ----- - gagcauuuauguggugcucaaaagaaaaggagagaaugaucccag g a ga - u uguuu gU AGCCAAGGAU ACUUGC G agccuc ggauuc augaa cac cu gc gc caa gg c ||||| || |||||||||| |||||| | |||||| |||||| ||||| ||| || || || ||| || a gcaga CA UCGGUUCCUG UGAACG c uuggag ccuaag uauuu gug ga cg ug guu cc a --g G A - Ac c aaca aucga a ---------------------------------------gacgaa g a aa a u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
CM000339.2: 16015779-16015981 [-]
Database links
Mature ptc-miR169k-5p
| Accession | MIMAT0001967 |
| Description | Populus trichocarpa ptc-miR169k-5p mature miRNA |
| Sequence | 11 - UAGCCAAGGAUGACUUGCCUG - 31 |
| Evidence | not_experimental |
Mature ptc-miR169k-3p
| Accession | MIMAT0055606 |
| Description | Populus trichocarpa ptc-miR169k-3p mature miRNA |
| Sequence | 177 - AGCAAGUGUCCUUGGCUAACG - 197 |
| Evidence |
experimental
unknown |
References
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