Stem-loop sequence ptc-MIR169l

Accession

MI0002262 (change log)

Description

Populus trichocarpa miR169l stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

9 open access papers mention ptc-MIR169l
(14 sentences)

Stem-loop

   ucu    -uga          u    u     - -ua  u       aucauuaugcauaaauagaacgaaaua 
5'    uguu    uagccaagga gacu gccug c   ca acaagag                           u
      ||||    |||||||||| |||| ||||| |   || |||||||                           g
3'    acag    aucgguuccu cuga cggac g   gu uguucuc                           u
   ---    ucga          -    -     c uug  u       aaaagugacguaauuaauuaugguaca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000353.2: 7526169-7526311 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR169l

• ptc-MIR169m: CM000353.2: 7526473-7526591 [-]
• ptc-MIR169l: CM000353.2: 7526169-7526311 [-]

Database links

• miRBase Tracker:MI0002262

Mature sequence ptc-miR169l

• Accession: MIMAT0001968
• Sequence: 11 - uagccaaggaugacuugccug - 31
• Evidence: by similarity; MI0000212

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).