miRBase entry: ptc-MIR169m

Stem-loop ptc-MIR169m


Accession
MI0002263
Description
Populus trichocarpa ptc-MIR169m precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
9 open access papers mention ptc-MIR169m
(18 sentences)

Sequence

ucuuguuuggUAGCCAAGGAUGACUUGCCUGcucccuucaaggagguuucaugaaaugcagacaugaucucucgaaaccccuguuggguuucaggcggucuccuuggcuaacuugacag
...((((.((((((((((((.((((.(((((..(((..((.((.((((((..((.((.((....)))).))..))))))))))..)))...)))))))))))))))))).))).)))).

Structure
ucu    u   -         U    U     -cu   uu  a  a      au  a  g  g 
   uguu ggU AGCCAAGGA GACU GCCUG   ccc  ca gg gguuuc  ga au ca a
   |||| ||| ||||||||| |||| |||||   |||  || || ||||||  || || ||  
   acag uca ucgguuccu cugg cggac   ggg  gu cc ccaaag  cu ua gu c
--g    u   a         -    -     uuu   uu  -  -      cu  c  -  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000353.2: 7526473-7526591 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR169m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR169m

Accession MIMAT0001969
Description Populus trichocarpa ptc-miR169m mature miRNA
Sequence 11 - UAGCCAAGGAUGACUUGCCUG - 31
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604