miRBase entry: ptc-MIR169n

Stem-loop ptc-MIR169n


Accession
MI0002264
Description
Populus trichocarpa ptc-MIR169n precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
9 open access papers mention ptc-MIR169n
(15 sentences)

Sequence

agaguggauuUGAGCCAAGGAUGACUUGCCGcagaugcaugguccuugcugcugaucacauaccaagggggguuuugggugGCAAGCAUCCUUGGUUCUCCuucgcu
..((((((...((((((((((((.((((((((.((.((....((((((.((.((....)))).))))))..)).))..))))))))))))))))))))...))))))

Structure
ag      uuU            A        -a  u  augg      c  c  a 
  agugga   GAGCCAAGGAUG CUUGCCGc  ga gc    uccuug ug ug u
  ||||||   |||||||||||| ||||||||  || ||    |||||| || ||  
  ucgcuu   CUUGGUUCCUAC GAACGgug  uu ug    gggaac au ac c
--      CCU            -        gg  u  --gg      c  -  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ptc-miR169n-5p

Accession MIMAT0001970
Description Populus trichocarpa ptc-miR169n-5p mature miRNA
Sequence 11 - UGAGCCAAGGAUGACUUGCCG - 31
Evidence experimental
miRNAseq [2]

Mature ptc-miR169n-3p

Accession MIMAT0022899
Description Populus trichocarpa ptc-miR169n-3p mature miRNA
Sequence 82 - GCAAGCAUCCUUGGUUCUCC - 101
Evidence experimental
miRNAseq [2]

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034