Stem-loop ptc-MIR169n

Accession

MI0002264

Description

Populus trichocarpa ptc-MIR169n precursor miRNA

Literature search

11 open access papers mention ptc-MIR169n
(18 sentences)

Sequence

34757 reads, 569.0 reads per million, 9 experiments

agaguggauuUGAGCCAAGGAUGACUUGCCgcagaugcaugguccuugcugcugaucacauaccaagggggguuuugggugGCAAGCAUCCUUGGUUCUCCUucgcu
..((((((...((((((((((((.((((((((.((.((....((((((.((.((....)))).))))))..)).))..))))))))))))))))))))...))))))

Structure

ag      uuU            A        -a  u  augg      c  c  a 
  agugga   GAGCCAAGGAUG CUUGCCgc  ga gc    uccuug ug ug u
  ||||||   |||||||||||| ||||||||  || ||    |||||| || ||  
  ucgcuU   CUUGGUUCCUAC GAACGgug  uu ug    gggaac au ac c
--      CCU            -        gg  u  --gg      c  -  a 

Annotation confidence High

Genome context

Unknown

Mature ptc-miR169n-5p

• Accession: MIMAT0001970
• Description: Populus trichocarpa ptc-miR169n-5p mature miRNA
• Sequence: 11 - UGAGCCAAGGAUGACUUGCC - 30
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR169n-3p

• Accession: MIMAT0022899
• Description: Populus trichocarpa ptc-miR169n-3p mature miRNA
• Sequence: 82 - GCAAGCAUCCUUGGUUCUCCU - 102
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034