Stem-loop ptc-MIR169p

Accession

MI0002266

Description

Populus trichocarpa ptc-MIR169p precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

9 open access papers mention ptc-MIR169p
(12 sentences)

Sequence

gguguaggaguuuugcaugaagagguagagaguagaaugCAGCCAAGGAUGACUUGCCGGcauuuccucccagcuagcuagcaagccuucuauuuggcaugccuggccggcaggauguccuuggcuauauuuuguucucuucuucucaugugagacuccaggcc
(((.(.((((((((((((((.((((.(((((((((((((.((((((((((..(((((((((.........(((.......(((.(((........))).)))))))))))))))..)))))))))).))))))))))))).))))))))))))))))))).)))

Structure

   g a              a    u             C          GA         auuuccucc   cuagcua   a   uuc 
ggu u ggaguuuugcauga gagg agagaguagaaug AGCCAAGGAU  CUUGCCGGc         cag       gca gcc   u
||| | |||||||||||||| |||| ||||||||||||| ||||||||||  |||||||||         |||       ||| |||    
ccg a ccucagaguguacu cuuc ucucuuguuuuau ucgguuccug  ggacggccg         guc       cgu cgg   a
   g -              -    u             a          ua         ---------   -------   a   uuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR169p

• Accession: MIMAT0001972
• Description: Populus trichocarpa ptc-miR169p mature miRNA
• Sequence: 40 - CAGCCAAGGAUGACUUGCCGG - 60
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604