Stem-loop ptc-MIR169q

Accession

MI0002267

Description

Populus trichocarpa ptc-MIR169q precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

9 open access papers mention ptc-MIR169q
(12 sentences)

Sequence

ucuuguuaguUAGCCAAGGACGACUUGCCUGuuccuagcaauuugggauuugcccuggacuaagaggcaggacccucauuccggguuucaggcagucuccuuggcuagguugaca
...(((((.(((((((((((.((((.(((((..(((.(.(((..(((.((((((((......)).)))))).)))..)))).)))...))))))))))))))))))))..)))))

Structure

ucu     -g           C    U     -uu   a c   uu   a      -  gg 
   uguua  uUAGCCAAGGA GACU GCCUG   ccu g aau  ggg uuugcc cu  a
   |||||  ||||||||||| |||| |||||   ||| | |||  ||| |||||| ||   
   acagu  gaucgguuccu cuga cggac   ggg c uua  ccc ggacgg ga  c
---     ug           -    -     uuu   c -   cu   a      a  au 

Annotation confidence Not enough data

Genome context

CM000337.2: 27741711-27741825 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR169q

Mature ptc-miR169q

• Accession: MIMAT0001973
• Description: Populus trichocarpa ptc-miR169q mature miRNA
• Sequence: 11 - UAGCCAAGGACGACUUGCCUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604