Stem-loop sequence ptc-MIR169r

Accession MI0002268
Description Populus trichocarpa miR169r stem-loop
Gene family MIPF0000012; MIR169_1
Stem-loop 
gag    -u           au    u      --u    c  -uaa         aa      
   gguu  gguagccaagg  gacu gccuau   uccu ca    ggcuuuaaa  gcaug 
   ||||  |||||||||||  |||| ||||||   |||| ||    |||||||||  |||| a
   ucga  cuauugguuuc  cuga cggaua   ggga gu    ucgagauuu  uguaa 
---    uc           au    -      cuu    a  uaac         gg
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Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_15: 12082579-12082697 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR169r
ptc-MIR169u scaffold_15: 12074209-12074330 [+]
ptc-MIR169r scaffold_15: 12082579-12082697 [+]

Mature sequence ptc-miR169r

Accession MIMAT0001974
Sequence

11 -  

uagccaaggaugacuugccua

 - 31

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Evidence by similarity; MI0000212

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).