Accession
MI0002277
Description
Populus trichocarpa
ptc-MIR171a precursor miRNA
Gene family
MIPF0000030;
MIR171_1
Literature search
6 open access papers mention ptc-MIR171a
(15 sentences)
(15 sentences)
Sequence
ucagagaaaacgGGAUAUUGGUACGGUUCAAUCagaaaguaaugcucccaaaaguauagaguacuauuguuugaUUGAGCCGUGCCAAUAUCACGuacacucau
...(((...(((.(((((((((((((((((((((((.((((.(((((...........))))).)))).))))))))))))))))))))))).)))...)))..
...(((...(((.(((((((((((((((((((((((.((((.(((((...........))))).)))).))))))))))))))))))))))).)))...)))..
Structure
uca aaa G a a ccaa gag acg GAUAUUGGUACGGUUCAAUCaga agua ugcuc a ||| ||| ||||||||||||||||||||||| |||| ||||| a cuc uGC CUAUAACCGUGCCGAGUUaguuu uuau augag g -ua aca A g c auau
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
CM000340.2: 764743-764846 [+]
Database links
Mature ptc-miR171a-3p
| Accession | MIMAT0001983 |
| Description | Populus trichocarpa ptc-miR171a-3p mature miRNA |
| Sequence | 75 - UUGAGCCGUGCCAAUAUCACG - 95 |
| Evidence |
experimental
cloned [1], miRNAseq [4] |
Mature ptc-miR171a-5p
| Accession | MIMAT0022901 |
| Description | Populus trichocarpa ptc-miR171a-5p mature miRNA |
| Sequence | 13 - GGAUAUUGGUACGGUUCAAUC - 33 |
| Evidence |
experimental
miRNAseq [4] |
References
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