miRBase entry: ptc-MIR171i

Stem-loop ptc-MIR171i


Accession
MI0002285
Description
Populus trichocarpa ptc-MIR171i precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
6 open access papers mention ptc-MIR171i
(11 sentences)

Sequence

gagugacuaugauauuggccugguucacucagaucacgacuucagagcaaagugucuuucuucuucuucuuuuucuucuucuucuuguuuuauguucguuugauuUGAUUGAGCCGUGCCAAUAUCucaguacuc
(((((.((..(((((((((.(((((((.(((((((((((....(((((((..................................)))))))....))))..))))))).))))))).)))))))))..)))))))

Structure
     a  au         c       c       --    cuuc       agugucuuucuucuuc 
gagug cu  gauauuggc ugguuca ucagauc  acga    agagcaa                u
||||| ||  ||||||||| ||||||| |||||||  ||||    |||||||                 
cucau ga  CUAUAACCG GCCGAGU AGUuuag  ugcu    uuuuguu                u
     -  cu         U       U       uu    ugua       cuucuucuucuuuuuc 


Annotation confidence Not enough data
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Genome context
CM000341.2: 7776851-7776985 [+]

Database links

Mature ptc-miR171i

Accession MIMAT0001991
Description Populus trichocarpa ptc-miR171i mature miRNA
Sequence 106 - UGAUUGAGCCGUGCCAAUAUC - 126
Evidence experimental
cloned [1]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  3. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203