Stem-loop ptc-MIR172h

Accession

MI0002294

Description

Populus trichocarpa ptc-MIR172h precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

8 open access papers mention ptc-MIR172h
(33 sentences)

Sequence

cuguuugccgauGGAGCACCAUCAAGAUUCACAaacuuuauuagggcuaauaaguggugaugaugguggcuuuugguggucccuucguuucaacccaauagccauuugaauugGGAAUCUUGAUGAUGCUGCAGcggcaauaa
....((((((.((.((((.(((((((((((.(((..((((....(((((....((...(((((.((.((((......)))))).)))))...))....)))))...))))))).))))))))))).)))).)).))))))...

Structure

cugu      a  G    C           A   ac    uuag     auaa  ggu     u  u    uu 
    uugccg uG AGCA CAUCAAGAUUC CAa  uuua    ggcua    gu   gauga gg ggcu  u
    |||||| || |||| ||||||||||| |||  ||||    |||||    ||   ||||| || ||||   
    aacggc AC UCGU GUAGUUCUAAG guu  aagu    ccgau    ca   uugcu cc cugg  g
-aau      G  G    A           G   --    -uua     aacc  acu     u  -    ug 

Annotation confidence Not enough data

Genome context

CM000344.2: 3367114-3367256 [+]

Mature ptc-miR172h-3p

• Accession: MIMAT0002000
• Description: Populus trichocarpa ptc-miR172h-3p mature miRNA
• Sequence: 114 - GGAAUCUUGAUGAUGCUGCAG - 134
• Evidence: experimental ; cloned [1], miRNAseq [4]

Mature ptc-miR172h-5p

• Accession: MIMAT0022906
• Description: Populus trichocarpa ptc-miR172h-5p mature miRNA
• Sequence: 13 - GGAGCACCAUCAAGAUUCACA - 33
• Evidence: experimental ; miRNAseq [4]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


4. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034