miRBase entry: ptc-MIR172i

Stem-loop ptc-MIR172i


Accession
MI0002295
Description
Populus trichocarpa ptc-MIR172i precursor miRNA

Literature search
8 open access papers mention ptc-MIR172i
(33 sentences)

Sequence

auguggugaaggcagcaagucgcggguuguuguuggcgaaaugguucuguugguugaauggaagaguagcugaaggaacaguuuuggucgaagaagAGAAUCCUGAUGAUGCUGCAAcacagagc
.((((......((((((.((((.(((((.((.((((((((((.(((((.(((((((..........))))))).))))).))))).)))))....)).)))))))))..))))))..))))....

Structure
---a    gugaag      -a    c     g  ---g     -     g     g       aaug 
    ugug      gcagca  gucg ggguu uu    uuggc gaaau guucu uugguug    g
    ||||      ||||||  |||| ||||| ||    ||||| ||||| ||||| |||||||     
    acac      CGUCGU  UAGU CCUAA Ag    agcug uuuug caagg agucgau    a
cgag    ----AA      AG    -     G  aaga     g     a     a       gaga 


Annotation confidence Not enough data
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Genome context
CM000344.2: 2531029-2531153 [+]

Database links

Mature ptc-miR172i

Accession MIMAT0002001
Description Populus trichocarpa ptc-miR172i mature miRNA
Sequence 97 - AGAAUCCUGAUGAUGCUGCAA - 117
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604