Stem-loop ptc-MIR319d

Accession

MI0002299

Description

Populus trichocarpa ptc-MIR319d precursor miRNA

Literature search

8 open access papers mention ptc-MIR319d
(30 sentences)

Sequence

7907062 reads, 134115.0 reads per million, 9 experiments

aaugguuuaacAGAGCUUCCUUCAGUCCACUCauggacgggcgaaggguuuggauuagcugccgacucauucauucaaacacaguagacaaggaguggcagcggcugcuauugugaaugugugaaugacgcgggagauuaauuucauccuuuucuucucugugcUUGGACUGAAGGGAGCUCCCUUuaauugu
.((((((.((..(((((((((((((((((..((((((.(((.(((((((..(((((((((.(((..((((((((.((..((((((((.((.(..((....))..)))))))))))..)).))))))))..))).)).))))))).))))))).))).))))))..)))))))))))))))))..)).))))))

Structure

a      u  cA                 CU      c   c       uu       -  g   ac        u  aa        a  a ga  g 
 augguu aa  GAGCUUCCUUCAGUCCA  Caugga ggg gaagggu  ggauuag cu ccg  ucauucau ca  cacaguag ca g  gu g
 |||||| ||  |||||||||||||||||  |||||| ||| |||||||  ||||||| || |||  |||||||| ||  |||||||| || |  ||  
 uguuaa UU  CUCGAGGGAAGUCAGGU  gugucu uuc uuuccua  uuuaauu ga ggc  aguaagug gu  guguuauc gu c  cg c
-      u  CC                 Uc      c   u       -c       a  g   gc        u  aa        -  - gg  a 

Annotation confidence High

Genome context

CM000355.2: 15846565-15846757 [+]

Mature ptc-miR319d-5p

• Accession: MIMAT0055622
• Description: Populus trichocarpa ptc-miR319d-5p mature miRNA
• Sequence: 12 - AGAGCUUCCUUCAGUCCACUC - 32
• Evidence: experimental ; unknown

Mature ptc-miR319d-3p

• Accession: MIMAT0002005
• Description: Populus trichocarpa ptc-miR319d-3p mature miRNA
• Sequence: 165 - UUGGACUGAAGGGAGCUCCCUU - 186
• Evidence: experimental ; cloned [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203