Stem-loop ptc-MIR319h

Accession

MI0002303

Description

Populus trichocarpa ptc-MIR319h precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

8 open access papers mention ptc-MIR319h
(30 sentences)

Sequence

uuguaggggcuaaagugcuccuuuuaguccaauaaggagggcugagaagcggcuagagcugccaucucaugcauuuaggcaaugcuuaacauuuggcaaagagguuuaagcuuggccaggugcauggugugggagcaacuccuuccgcaugcuuuguucgcccaUUGGACUGAAGGGAGCUCCUgguuuuaccac
.((..(((((((....(((((((((((((((((..((.((((.((((.((((...(((((.((((.((((((((((.(((...((((((.((((.......))))))))))...))))))))))))).)))).)))...))...)))).).))).)))).)).)))))))))))))))))...)))))))..)).

Structure

u  ua       aagu                 aa  a    u   - a    cua  ---   g    c          a   aau      c    gg 
 ug  ggggcua    gcuccuuuuaguccaau  gg gggc gag a gcgg   ga   gcu ccau ucaugcauuu ggc   gcuuaa auuu  c
 ||  |||||||    |||||||||||||||||  || |||| ||| | ||||   ||   ||| |||| |||||||||| |||   |||||| ||||  a
 ac  uuuuggU    CGAGGGAAGUCAGGUUa  cc cuug uuc u cgcc   cu   cga ggug gguacgugga ccg   cgaauu ugga  a
c  ca       -CCU                 -c  g    u   g a    uuc  caa   g    u          -   guu      -    ga 

Annotation confidence Not enough data

Genome context

CM000351.2: 7395415-7395609 [+]

Mature ptc-miR319h

• Accession: MIMAT0002009
• Description: Populus trichocarpa ptc-miR319h mature miRNA
• Sequence: 165 - UUGGACUGAAGGGAGCUCCU - 184
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203