miRBase entry: ptc-MIR319i

Stem-loop ptc-MIR319i


Accession
MI0002304
Description
Populus trichocarpa ptc-MIR319i precursor miRNA
Gene family
MIPF0001104; MIR319

Literature search
8 open access papers mention ptc-MIR319i
(30 sentences)

Sequence

gugcagaaauggagguuccuuccagccucaagcaucuuuaagaugguggcgaugucuauuUUGGGCUGAAGGGAGCUCCCaauucuucu
....((((.(((.((((((((.(((((.((((((((.(((......))).))))).....)))))))).)))))))).))).))))...

Structure
gugc    a   a        c     u   -----     u   ag 
    agaa ugg gguuccuu cagcc caa     gcauc uua  a
    |||| ||| |||||||| ||||| |||     ||||| |||   
    ucuu aCC UCGAGGGA GUCGG GUU     uguag ggu  u
-ucu    a   C        A     -   uuauc     c   gg 


Annotation confidence Not enough data
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Genome context
CM000342.2: 24889057-24889145 [+]

Database links

Mature ptc-miR319i

Accession MIMAT0002010
Description Populus trichocarpa ptc-miR319i mature miRNA
Sequence 61 - UUGGGCUGAAGGGAGCUCCC - 80
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203