miRBase entry: ptc-MIR395a

Stem-loop ptc-MIR395a


Accession
MI0002315
Description
Populus trichocarpa ptc-MIR395a precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention ptc-MIR395a
(7 sentences)

Sequence

ggucacccugaguuccuccuagcuucuucaguacccguggaaagcuaaugcuacaauuaucuugagcugguaagacuggcaggugucagauguggauguguuaaagguaauauuauugauuauuuacggcgccauucaaguauuuguucuacuguuagaggauuuaaucaaguauaugugguauuacuccugauuugCUGAAGGGUUUGGAGGAACUCuaggugcu
((.((((..((((((((((.((((.((((((((.....(((..(.((((((((((..((.(((((...(((....(((((((....((((((((((((((((..(((((((.......)))))))..)))).))))))..)))))).....)))))))...)))...)))))))..)))))))))))))).....)))))))))))).))))))))))..))))))

Structure
  u    cu          u    u        cccgu   aa c          au  u     gcu   aaga       -gugu      --      -    aa       au 
gg cacc  gaguuccucc agcu cuucagua     gga  g uaaugcuaca  ua cuuga   ggu    cuggcag     cagaug  uggaug uguu  agguaau  u
|| ||||  |||||||||| |||| ||||||||     |||  | ||||||||||  || |||||   |||    |||||||     ||||||  |||||| ||||  |||||||  a
uc gugg  CUCAAGGAGG UUGG GAAGUCgu     ccu  c auuauggugu  au gaacu   uua    gauuguc     guuuau  acuuac gcgg  uuuauua  u
  -    au          U    -        uuagu   -- -          au  -     aau   -gga       aucuu      ga      c    ca       gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000338.2: 14667284-14667509 [+]

Database links

Mature ptc-miR395a

Accession MIMAT0002021
Description Populus trichocarpa ptc-miR395a mature miRNA
Sequence 198 - CUGAAGGGUUUGGAGGAACUC - 218
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604