miRBase entry: ptc-MIR395d

Stem-loop ptc-MIR395d


Accession
MI0002318
Description
Populus trichocarpa ptc-MIR395d precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention ptc-MIR395d
(7 sentences)

Sequence

guguccccuagaguuccucugagcacuucacugggaauuuccgaucaaaugaaagaguauuaucauuccuaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.(((((((......((........))........))))))).))))))))))))))))))))..)).).))

Structure
g  u c  ua                    c       --uuccga  aaa 
 ug c cc  gaguuccucugagcacuuca ugggaau        uc   u
 || | ||  |||||||||||||||||||| |||||||        ||    
 ac g gg  CUCAAGGGGGUUUGUGAAGU auccuua        ag   g
-  u u  uc                    C       cuauuaug  aaa 


Annotation confidence Not enough data
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Genome context
CM000342.2: 8410822-8410922 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR395d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR395d

Accession MIMAT0002024
Description Populus trichocarpa ptc-miR395d mature miRNA
Sequence 72 - CUGAAGUGUUUGGGGGAACUC - 92
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604