Stem-loop ptc-MIR395j

Accession

MI0002324

Description

Populus trichocarpa ptc-MIR395j precursor miRNA

Literature search

5 open access papers mention ptc-MIR395j
(7 sentences)

Sequence

115 reads, 2.0 reads per million, 9 experiments

guguccccuagaGUUCCUCUGAGCACUUCAUUggggaucuuccaucgaccugaaagaguauuaucauuccuaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.((((((((((.((......)).)))).........)))))).))))))))))))))))))))..)).).))

Structure

g  u c  ua                    U      ---------    c  uc 
 ug c cc  gaGUUCCUCUGAGCACUUCA Ugggga         ucuu ca  g
 || | ||  |||||||||||||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGGGUUUGUGAAGU auccuu         agaa gu  a
-  u u  uc                    C      acuauuaug    a  cc 

Annotation confidence High

Genome context

Unknown

Mature ptc-miR395j-5p

• Accession: MIMAT0055636
• Description: Populus trichocarpa ptc-miR395j-5p mature miRNA
• Sequence: 13 - GUUCCUCUGAGCACUUCAUU - 32
• Evidence: experimental ; unknown

Mature ptc-miR395j-3p

• Accession: MIMAT0002030
• Description: Populus trichocarpa ptc-miR395j-3p mature miRNA
• Sequence: 73 - CUGAAGUGUUUGGGGGAACUC - 93
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604