Stem-loop ptc-MIR395j

Accession

MI0002324

Description

Populus trichocarpa ptc-MIR395j precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

5 open access papers mention ptc-MIR395j
(7 sentences)

Sequence

guguccccuagaguuccucugagcacuucauuggggaucuuccaucgaccugaaagaguauuaucauuccuaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.((((((((((.((......)).)))).........)))))).))))))))))))))))))))..)).).))

Structure

g  u c  ua                    u      ---------    c  uc 
 ug c cc  gaguuccucugagcacuuca ugggga         ucuu ca  g
 || | ||  |||||||||||||||||||| ||||||         |||| ||   
 ac g gg  CUCAAGGGGGUUUGUGAAGU auccuu         agaa gu  a
-  u u  uc                    C      acuauuaug    a  cc 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR395j

• Accession: MIMAT0002030
• Description: Populus trichocarpa ptc-miR395j mature miRNA
• Sequence: 73 - CUGAAGUGUUUGGGGGAACUC - 93
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604