miRBase entry: ptc-MIR396b

Stem-loop ptc-MIR396b


Accession
MI0002326
Description
Populus trichocarpa ptc-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
6 open access papers mention ptc-MIR396b
(13 sentences)

Sequence

cuuuguauucUUCCACAGCUUUCUUGAACUGcaccuauuagauuaauguugauguuguugugcgauaugccaugaccauaugacauuguauucauuuuugcugcgguucaauaaagcugugggaagauacaa
..(((((((.((((((((((((.((((((((((.(.....((.(((((((.((((.(((((((.....).)))))).)))))))))))...))......).)))))))))).)))))))))))).)))))))

Structure
cu       c            C          c -uauua  --u       g    u      - g 
  uuguauu UUCCACAGCUUU UUGAACUGca c      ga   uaauguu augu guugug c a
  ||||||| |||||||||||| |||||||||| |      ||   ||||||| |||| |||||| | u
  aacauag agggugucgaaa aacuuggcgu g      cu   guuacag uaua caguac g a
--       a            u          c uuuuua  uau       -    c      c u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ptc-miR396b

Accession MIMAT0002032
Description Populus trichocarpa ptc-miR396b mature miRNA
Sequence 11 - UUCCACAGCUUUCUUGAACUG - 31
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604