miRBase entry: ptc-MIR396c

Stem-loop ptc-MIR396c


Accession
MI0002327
Description
Populus trichocarpa ptc-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
6 open access papers mention ptc-MIR396c
(13 sentences)

Sequence

ugccauguuuUUCCACAGCUUUCUUGAACUUccuagagccuagaggugcugcuagcuauacauauaacuuaagaaguucaagaaagccguggaauagcauga
...((((((.((((((.((((((((((((((((((((((((...)).))).)))).................))))))))))))))).)))))).)))))).

Structure
ugc      u      A               -----------------    -   -  a 
   cauguu UUCCAC GCUUUCUUGAACUUc                 cuag agc cu  
   |||||| |||||| |||||||||||||||                 |||| ||| || g
   guacga aaggug cgaaagaacuugaag                 gauc ucg gg  
--a      u      c               aauucaauauacauauc    g   u  a 


Annotation confidence Not enough data
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Genome context
CM000339.2: 15576014-15576115 [+]

Database links

Mature ptc-miR396c

Accession MIMAT0002033
Description Populus trichocarpa ptc-miR396c mature miRNA
Sequence 11 - UUCCACAGCUUUCUUGAACUU - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604