Stem-loop ptc-MIR398c

Accession

MI0002337

Description

Populus trichocarpa ptc-MIR398c precursor miRNA

Gene family

MIPF0000107; MIR398

Literature search

5 open access papers mention ptc-MIR398c
(14 sentences)

Sequence

aggauuccuacaGGAGCGACCUGAAAUCACAUGugggcugcacccuccuggguuaucuugagcaacaUGUGUUCUCAGGUCGCCCCUGccgggcuuu
.....(((..((((.(((((((((...(((((((..(((..((((....)))).......))).)))))))...))))))))).))))..)))....

Structure

aggau   ua    A         AAU       gg   -----gc    u 
     ucc  caGG GCGACCUGA   CACAUGu  gcu       accc c
     |||  |||| |||||||||   |||||||  |||       ||||  
     ggg  GUCC CGCUGGACU   GUGUaca  cga       uggg c
-uuuc   cc    C         CUU       -a   guucuau    u 

Annotation confidence Not enough data

Genome context

CM000345.2: 6795749-6795845 [-]

Mature ptc-miR398c-3p

• Accession: MIMAT0002043
• Description: Populus trichocarpa ptc-miR398c-3p mature miRNA
• Sequence: 68 - UGUGUUCUCAGGUCGCCCCUG - 88
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR398c-5p

• Accession: MIMAT0022912
• Description: Populus trichocarpa ptc-miR398c-5p mature miRNA
• Sequence: 13 - GGAGCGACCUGAAAUCACAUG - 33
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034