Stem-loop ptc-MIR399b

Accession

MI0002339

Description

Populus trichocarpa ptc-MIR399b precursor miRNA

Literature search

4 open access papers mention ptc-MIR399b
(9 sentences)

Sequence

ggugcaguugcauuacagggcaagcuuccauuggcaugcagccacuaagacacgcaauaucuaacacuugaugcauuccuguagagugcggcgccaUGCCAAAGGAGAUUUGCCCGGcaauucuuc
(((((....)))))...(((((((.((((.((((((((..(((...............(((........)))((((((.....)))))))))..)))))))).)))).)))))))...........

Structure

ggugcaguugcauuaca       c    a        ca   acuaagacacgcaauaucuaacacuugau      c 
                 gggcaag uucc uuggcaug  gcc                             gcauuc u
                 ||||||| |||| ||||||||  |||                             |||||| g
                 CCCGUUU GAGG AACCGUac  cgg                             cgugag u
------cuucuuaacGG       A    A        cg   -----------------------------      a 

Annotation confidence Not enough data

Genome context

CM000340.2: 4636054-4636179 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ptc-MIR399b

Mature ptc-miR399b

• Accession: MIMAT0002045
• Description: Populus trichocarpa ptc-miR399b mature miRNA
• Sequence: 97 - UGCCAAAGGAGAUUUGCCCGG - 117
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604