miRBase entry: ptc-MIR399b

Stem-loop ptc-MIR399b


Accession
MI0002339
Description
Populus trichocarpa ptc-MIR399b precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention ptc-MIR399b
(9 sentences)

Sequence

ggugcaguugcauuacagggcaagcuuccauuggcaugcagccacuaagacacgcaauaucuaacacuugaugcauuccuguagagugcggcgccaUGCCAAAGGAGAUUUGCCCGGcaauucuuc
(((((....)))))...(((((((.((((.((((((((..(((...............(((........)))((((((.....)))))))))..)))))))).)))).)))))))...........

Structure
ggugcaguugcauuaca       c    a        ca   acuaagacacgcaauaucuaacacuugau      c 
                 gggcaag uucc uuggcaug  gcc                             gcauuc u
                 ||||||| |||| ||||||||  |||                             |||||| g
                 CCCGUUU GAGG AACCGUac  cgg                             cgugag u
------cuucuuaacGG       A    A        cg   -----------------------------      a 


Annotation confidence Not enough data
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Genome context
CM000340.2: 4636054-4636179 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ptc-MIR399b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR399b

Accession MIMAT0002045
Description Populus trichocarpa ptc-miR399b mature miRNA
Sequence 97 - UGCCAAAGGAGAUUUGCCCGG - 117
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604