Stem-loop ptc-MIR399d

Accession

MI0002341

Description

Populus trichocarpa ptc-MIR399d precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention ptc-MIR399d
(9 sentences)

Sequence

ggaugcauuacugggcaauucuucuguuggcagcuggugacucauacugcacuagcugagauuaagcagcaagaguuugcucacUGCCAAAGAAGAUUUGCCCCGcaauuccuu
((((((......((((((.((((((.(((((((..((((((((...((((...............))))...))).)))))..))))))))))))).)))))).)))..)))..

Structure

--   --   auuacu      u      g       cu     -   aua    acuagc 
  gga  ugc      gggcaa ucuucu uuggcag  gguga cuc   cugc      u
  |||  |||      |||||| |||||| |||||||  ||||| |||   ||||      g
  ccu  acG      CCCGUU AGAAGA AACCGUc  ucguu gag   gacg      a
uu   ua   -----C      U      -       ac     u   aac    aauuag 

Annotation confidence Not enough data

Genome context

CM000340.2: 4632342-4632455 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR399d

Mature ptc-miR399d

• Accession: MIMAT0002047
• Description: Populus trichocarpa ptc-miR399d mature miRNA
• Sequence: 85 - UGCCAAAGAAGAUUUGCCCCG - 105
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604