miRBase entry: ptc-MIR399g

Stem-loop ptc-MIR399g


Accession
MI0002344
Description
Populus trichocarpa ptc-MIR399g precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention ptc-MIR399g
(9 sentences)

Sequence

ugaugaauaacugugcaauucuccuuuggcagacguauauggcguucggacaccaacuuuggacUGCCAAAGGAGAAUUGCCCUGccauucaac
...(((((..(.(.((((((((((((((((((.((....(((.((....)).)))....))..)))))))))))))))))).).)..)))))..

Structure
uga     aa u u                  -a  uaua   c  u 
   ugaau  c g gcaauucuccuuuggcag  cg    ugg gu c
   |||||  | | ||||||||||||||||||  ||    ||| ||  
   acuua  G C CGUUAAGAGGAAACCGUc  gu    acc ca g
-ca     cc U C                  ag  uuca   a  g 


Annotation confidence Not enough data
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Genome context
CM000340.2: 4640161-4640254 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ptc-MIR399g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR399g

Accession MIMAT0002050
Description Populus trichocarpa ptc-miR399g mature miRNA
Sequence 65 - UGCCAAAGGAGAAUUGCCCUG - 85
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604