Stem-loop ptc-MIR399g

Accession

MI0002344

Description

Populus trichocarpa ptc-MIR399g precursor miRNA

Literature search

4 open access papers mention ptc-MIR399g
(9 sentences)

Sequence

ugaugaauaacugugcaauucuccuuuggcagacguauauggcguucggacaccaacuuuggacUGCCAAAGGAGAAUUGCCCUGccauucaac
...(((((..(.(.((((((((((((((((((.((....(((.((....)).)))....))..)))))))))))))))))).).)..)))))..

Structure

uga     aa u u                  -a  uaua   c  u 
   ugaau  c g gcaauucuccuuuggcag  cg    ugg gu c
   |||||  | | ||||||||||||||||||  ||    ||| ||  
   acuua  G C CGUUAAGAGGAAACCGUc  gu    acc ca g
-ca     cc U C                  ag  uuca   a  g 

Annotation confidence Low

Genome context

CM000340.2: 4640161-4640254 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ptc-MIR399g

Mature ptc-miR399g

• Accession: MIMAT0002050
• Description: Populus trichocarpa ptc-miR399g mature miRNA
• Sequence: 65 - UGCCAAAGGAGAAUUGCCCUG - 85
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604