Stem-loop ptc-MIR399i

Accession

MI0002346

Description

Populus trichocarpa ptc-MIR399i precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention ptc-MIR399i
(9 sentences)

Sequence

aaaccaguuguaggguaccucuuacuuggcaagcaauggugauuguugcaaacauugcagaauuugaucucggugucuUGCCAAAGGAGAGUUGCCCUAugacuguuu
....(((((((((((((.(((((..((((((((..((.(.(((((((((((...))))))....))))).).))..))))))))..))))).)))))))))))))...

Structure

aaac             c     ac        ca  g u     ----      a 
    caguuguagggua cucuu  uuggcaag  au g gauug    uugcaa  
    ||||||||||||| |||||  ||||||||  || | |||||    |||||| c
    gucaguAUCCCGU GAGAG  AACCGUuc  ug c cuagu    gacguu  
-uuu             U     GA        ug  g u     uuaa      a 

Annotation confidence Not enough data

Genome context

CM000348.2: 13767450-13767557 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR399i

Mature ptc-miR399i

• Accession: MIMAT0002052
• Description: Populus trichocarpa ptc-miR399i mature miRNA
• Sequence: 79 - UGCCAAAGGAGAGUUGCCCUA - 99
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604