Stem-loop ptc-MIR399j

Accession

MI0002347

Description

Populus trichocarpa ptc-MIR399j precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention ptc-MIR399j
(9 sentences)

Sequence

ugcauuacagggcaagaccuccauuggcaggcagccacuaaagcaugcauuuaaauuaugcguucuuuuaagugugcccucUGCCAAAGGAGAUUUGUCCGGcaaaucuucu
.........(((((((..((((.((((((((..((((((((((.((((((.......)))))).))))..)))).))..)))))))).)))).)))))))............

Structure

---ugcauuaca       ac    a        ca  -    --    c      uu 
            gggcaag  cucc uuggcagg  gc cacu  aaag augcau  a
            |||||||  |||| ||||||||  || ||||  |||| ||||||  a
            CCUGUUU  GAGG AACCGUcu  cg guga  uuuc ugcgua  a
ucuucuaaacGG       -A    A        cc  u    au    u      uu 

Annotation confidence Not enough data

Genome context

CM000347.2: 7754550-7754661 [+]

Mature ptc-miR399j

• Accession: MIMAT0002053
• Description: Populus trichocarpa ptc-miR399j mature miRNA
• Sequence: 82 - UGCCAAAGGAGAUUUGUCCGG - 102
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604