Stem-loop ptc-MIR399c

Accession

MI0002348

Description

Populus trichocarpa ptc-MIR399c precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention ptc-MIR399c
(9 sentences)

Sequence

ggagcauugcugagcaaauuuccuuuggcagauaccacaaguaacaagagcuuaaguuguucauuUGCCAAAGGAGAUUUGCUCACcaauucca
(((..((((.(((((((((((((((((((((((((.((((((.......))))..)).))..))))))))))))))))))))))).))))))).

Structure

-   gc    c                       --  c  --    aa 
 gga  auug ugagcaaauuuccuuuggcagau  ac ac  aagu  c
 |||  |||| |||||||||||||||||||||||  || ||  ||||  a
 ccu  uaac ACUCGUUUAGAGGAAACCGUuua  ug ug  uucg  a
a   --    C                       cu  u  aa    ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR399c

• Accession: MIMAT0002054
• Description: Populus trichocarpa ptc-miR399c mature miRNA
• Sequence: 66 - UGCCAAAGGAGAUUUGCUCAC - 86
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604