miRBase entry: ptc-MIR399e

Stem-loop ptc-MIR399e


Accession
MI0002349
Description
Populus trichocarpa ptc-MIR399e precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention ptc-MIR399e
(9 sentences)

Sequence

aacuaguuaaauggcuucucuucuuuggcaggugaugguauagauuacaacuuauagcuuuaaucuaguauucaguuaccCGCCAAAGGAGAGUUGCCCUCuaacuucc
....(((((...(((..((((((((((((.(((((((((((((((((...((...))...)))))).)))))..)))))).))))))))))))..)))...)))))...

Structure
aacu     aau   uu            a      --     -      caa  u 
    aguua   ggc  cucuucuuuggc ggugau  gguau agauua   cu  
    |||||   |||  |||||||||||| ||||||  ||||| ||||||   || a
    ucaau   CCG  GAGAGGAAACCG ccauug  uuaug ucuaau   ga  
-ccu     CUC   UU            C      ac     a      uuc  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ptc-miR399e

Accession MIMAT0002055
Description Populus trichocarpa ptc-miR399e mature miRNA
Sequence 81 - CGCCAAAGGAGAGUUGCCCUC - 101
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604