Stem-loop ptc-MIR403a

Accession

MI0002350

Description

Populus trichocarpa ptc-MIR403a precursor miRNA

Gene family

MIPF0000290; MIR403

Literature search

2 open access papers mention ptc-MIR403a
(2 sentences)

Sequence

aggcauauuucagguuugugcaugaaucuaauauagcuaaaaaaaucccaucaaacacaaauuaaaauacuagauagcaaucagcacuaguuuaguauaguaUUAGAUUCACGCACAAACUCGuaaucuguc
.((((.(((.(.(((((((((.((((((((((((.(((((............................(((((...((.....)).))))))))))...)))))))))))).))))))))).).))).))))

Structure

a    u   u a         a            --a     aaaaaucccaucaaacacaaauuaaaau     aua  a 
 ggca auu c gguuugugc ugaaucuaauau   gcuaa                            acuag   gc a
 |||| ||| | ||||||||| ||||||||||||   |||||                            |||||   || u
 cugu uaa G UCAAACACG ACUUAGAUUaug   ugauu                            ugauc   cg c
-    c   u C         C            aua     ----------------------------     --a  a 

Annotation confidence Not enough data

Genome context

CM000338.2: 15394788-15394919 [+]

Mature ptc-miR403a

• Accession: MIMAT0002056
• Description: Populus trichocarpa ptc-miR403a mature miRNA
• Sequence: 103 - UUAGAUUCACGCACAAACUCG - 123
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


3. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604