miRBase entry: ptc-MIR475c

Stem-loop ptc-MIR475c


Accession
MI0002363
Description
Populus trichocarpa ptc-MIR475c precursor miRNA
Gene family
MIPF0000145; MIR475

Literature search
2 open access papers mention ptc-MIR475c
(10 sentences)

Sequence

uaacaucuugaacaauggccauuguaagaguaagugguccaugagucaauaacucucuuugcagaaaugcaugacaaagcauugacuccuauuucacccUUACAAUGUCCAUUGAUUAAGagguu
.(((.((((((.((((((.(((((((((.((((((((.....((((((((.........((((....)))).........)))))))))))))).)).))))))))).)))))).)))))).)))

Structure
u   a      a      c         a  -      uccau        aacucucuu    g 
 aac ucuuga caaugg cauuguaag gu aagugg     gagucaau         ugca a
 ||| |||||| |||||| ||||||||| || ||||||     ||||||||         ||||  
 uug aGAAUU GUUACC GUAACAUUc ca uuuauc     cucaguua         acgu a
-   g      A      U         c  c      -----        cgaaacagu    a 


Annotation confidence Not enough data
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Genome context
CM000346.2: 12908656-12908780 [+]

Database links

Mature ptc-miR475c

Accession MIMAT0002069
Description Populus trichocarpa ptc-miR475c mature miRNA
Sequence 100 - UUACAAUGUCCAUUGAUUAAG - 120
Evidence not_experimental

References

  1. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203