miRBase entry: ptc-MIR478a

Stem-loop ptc-MIR478a


Accession
MI0002370
Description
Populus trichocarpa ptc-MIR478a precursor miRNA
Gene family
MIPF0000052; MIR478

Literature search
1 open access papers mention ptc-MIR478a
(2 sentences)

Sequence

cucccuuuuaggguuaaaacgucaacauuuuagacgagucucuuauuuuuagggacugguguuauuuuuUGACGUGUCUUCUAUUUUUAGGGAcug
.(((((..(((((.....(((((((......(.((.(((((((.......))))))).)).)......)))))))...))))).....)))))...

Structure
--c     ---uu     uuaaa       cauuuu g  g       ua 
   ucccu     uaggg     acgucaa      a ac agucucu  u
   |||||     |||||     |||||||      | || |||||||  u
   AGGGA     AUCUU     UGCAGUu      u ug ucaggga  u
guc     UUUUU     --CUG       uuuuau g  g       uu 


Annotation confidence Not enough data
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Genome context
CM000348.2: 7133508-7133603 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR478a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR478a

Accession MIMAT0002076
Description Populus trichocarpa ptc-miR478a mature miRNA
Sequence 70 - UGACGUGUCUUCUAUUUUUAGGGA - 93
Evidence experimental
cloned [1], PCR [1]

References

  1. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203