miRBase entry: ptc-MIR478d

Stem-loop ptc-MIR478d


Accession
MI0002373
Description
Populus trichocarpa ptc-MIR478d precursor miRNA
Gene family
MIPF0000052; MIR478

Literature search
1 open access papers mention ptc-MIR478d
(2 sentences)

Sequence

agccuaaucgacgugucuccuacuuuuaggguuggacguuaacuuuuuuaugaauagccuaguUGACAUGUCUUCUAUUUUUAGUAAccaagauug
.........((((((((..((.......((((((..(((..........)))..))))))))..))))))))........................

Structure
---------------agccuaauc        uc  acuuuua      ga   uaac 
                        gacguguc  cu       ggguug  cgu    u
                        ||||||||  ||       ||||||  |||     
                        CUGUACAG  ga       uccgau  gua    u
guuagaaccAAUGAUUUUUAUCUU        Uu  -------      aa   uuuu 


Annotation confidence Not enough data
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Genome context
CM000339.2: 13828473-13828568 [+]

Database links

Mature ptc-miR478d

Accession MIMAT0002079
Description Populus trichocarpa ptc-miR478d mature miRNA
Sequence 64 - UGACAUGUCUUCUAUUUUUAGUAA - 87
Evidence experimental
cloned [1], PCR [1]

References

  1. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203