Stem-loop ptc-MIR478p

Accession

MI0002384

Description

Populus trichocarpa ptc-MIR478p precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478p
(2 sentences)

Sequence

ucuccuuuuuugggacaaacgucaauauuuuagacgagucuccuaauuuuuagggacuaaugucauuuuUAACGUGUCUUCUAUUUUUAGGGAcc
..((((.....))))....((((.........)))).(((.(((((....(((((((..((((........))))))).))))...)))))))).

Structure

ucuccuuuuuugggacaaacgucaauauuuuagacga   u     uuuu    -   ua    cau 
                                     guc ccuaa    uagg gac  augu   u
                                     ||| |||||    |||| |||  ||||    
                                     cAG GGAUU    AUCU CUG  UGCA   u
------------------------------------c   -     -UUU    U   --    AUu 

Annotation confidence Not enough data

Genome context

CM000355.2: 3787766-3787860 [-]

Mature ptc-miR478p

• Accession: MIMAT0002090
• Description: Populus trichocarpa ptc-miR478p mature miRNA
• Sequence: 70 - UAACGUGUCUUCUAUUUUUAGGGA - 93
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203