miRBase entry: ptc-MIR478r

Stem-loop ptc-MIR478r


Accession
MI0002386
Description
Populus trichocarpa ptc-MIR478r precursor miRNA
Gene family
MIPF0000052; MIR478

Literature search
1 open access papers mention ptc-MIR478r
(2 sentences)

Sequence

agucuccuaguuugagggacugauaucauuuuUAACGUGUCUCCUAUUUUUAGGGAcc
.(((.(((((....((((((..................))).)))....)))))))).

Structure
a   u     uuug   -   ugauauca 
 guc ccuag    agg gac        u
 ||| |||||    ||| |||         
 cAG GGAUU    UCC CUG        u
c   -     UUUA   U   UGCAAUuu 


Annotation confidence Not enough data
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Genome context
CM000337.2: 44456408-44456465 [+]

Database links

Mature ptc-miR478r

Accession MIMAT0002092
Description Populus trichocarpa ptc-miR478r mature miRNA
Sequence 33 - UAACGUGUCUCCUAUUUUUAGGGA - 56
Evidence not_experimental

References

  1. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203