Stem-loop ptc-MIR478n

Accession

MI0002388

Description

Populus trichocarpa ptc-MIR478n precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478n
(2 sentences)

Sequence

ucuccuuuuuagggauaaacgucaauauuuuagacgagucuccuaauuuuuagggacugaugucauuuuUAACGUGUCUCCUAUUUUUAGGGAcc
..(((((...)))))....((((.........)))).(((.(((((....(((((((..((((........))))))).))))...)))))))).

Structure

ucuccuuuuuagggauaaacgucaauauuuuagacga   u     uuuu    -   ug    cau 
                                     guc ccuaa    uagg gac  augu   u
                                     ||| |||||    |||| |||  ||||    
                                     cAG GGAUU    AUCC CUG  UGCA   u
------------------------------------c   -     -UUU    U   --    AUu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR478n

• Accession: MIMAT0002094
• Description: Populus trichocarpa ptc-miR478n mature miRNA
• Sequence: 70 - UAACGUGUCUCCUAUUUUUAGGGA - 93
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203