miRBase entry: ptc-MIR480

Stem-loop ptc-MIR480


Accession
MI0002390
Description
Populus trichocarpa ptc-MIR480 precursor miRNA


Sequence

uaauauguuugggguugauccuuguuuaguuauaauagacccacaccugacugcuuagaauuauuuguuaucgcauauccgacuacauuauugacguugaaaaacagagaACUACUACAUCAUUGACGUUGAACcauaaa
...((((..(((((((.....((((......))))..))))).)).((((....)))).......(((..(((......)))..)))...((((((((((.......((.....))......))))))))))..))))..

Structure
uaa    uuugggguugauccuuguuuaguuauaauagacccacaccugacugcuuagaauuauuuguuaucgcauauccgacuacauua          aaaacag  a 
   uaug                                                                                   uugacguuga       ag A
   ||||                                                                                   ||||||||||       || C
   auac                                                                                   AGUUGCAGUU       UC U
-aa    ---------------------------------------------------------------------------------CA          -ACUACA  A 


Annotation confidence Not enough data
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Genome context
CM000350.2: 7250847-7250986 [-]

Database links

Mature ptc-miR480

Accession MIMAT0002096
Description Populus trichocarpa ptc-miR480 mature miRNA
Sequence 111 - ACUACUACAUCAUUGACGUUGAAC - 134
Evidence experimental
cloned [1], PCR [1]

References

  1. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203