Stem-loop ptc-MIR481b

Accession

MI0002393

Description

Populus trichocarpa ptc-MIR481b precursor miRNA

Gene family

MIPF0000131; MIR481

Literature search

1 open access papers mention ptc-MIR481b
(1 sentences)

Sequence

auccuAGGACCUCACUUAACAGCUUAAGCuauuggguugagaugguucuuugacaugauaucagagccuugauaaccaaguggucucgaguuugaaucucaucauccucauuuauuugauaaaaaauacuuaaagggguguguuagagaauaauauaaaucauauucuggaaccucaccuaacagcuuaagcuauuggguugaaaugauucuuugacauu
.((..(((((.((((((((.((((((((((.((((((.((...((((((.....(((((...(((.(((((.....)))).).))).(((..(((......)))..)))..((((((..(((...((((((....)))))).)))..)))))).....))))).....)))))))))))))).)))))))))).))))).)))...).))))..))....

Structure

---a  cu    - --C   -     C          a      u  gau      uugac     aucagagccuugauaaccaaguggucucgaguuugaaucucaucauccucau      ga   aaa      a 
    uc  AGGA C   UCA CUUAA AGCUUAAGCu uugggu ga   gguucu     augau                                                    uuauuu  uaa   auacuu a
    ||  |||| |   ||| ||||| |||||||||| |||||| ||   ||||||     |||||                                                    ||||||  |||   ||||||  
    ag  ucuu g   agu ggguu ucgaauucga aaucca cu   ccaagg     uacua                                                    aauaag  auu   uguggg a
uuac  uu    a uaa   u     a          c      -  ---      ucuua     -----------------------------------------------aauau      ag   --g      g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR481b

• Accession: MIMAT0002099
• Description: Populus trichocarpa ptc-miR481b mature miRNA
• Sequence: 6 - AGGACCUCACUUAACAGCUUAAGC - 29
• Evidence: experimental ; PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203