Stem-loop ptc-MIR481c

Accession

MI0002394

Description

Populus trichocarpa ptc-MIR481c precursor miRNA

Gene family

MIPF0000131; MIR481

Literature search

1 open access papers mention ptc-MIR481c
(1 sentences)

Sequence

auccuAGGACCUCACUUAACAGCUUAAGCuuuuggguugagaugauucuuugacaugauaucagagcuuugaugaccaagcggucacgaguucgaaucucaccaucccuauuuauuugauaaaauuaagcacaagguaaugugagccugugcaaguuucaagcccaaagagcuuucacuugaggggguguguuag
...((((.(((((.(((((......(((((((((((((((((((((((........)).))).((((((...(((((....))))).))))))...............((((.....)))).......(((((.(((.......))))))))..))))).))))).))))))))....))))).))).)).))))

Structure

auc    G  -   A     CAGCUU        -     -     -----------------------------------------gauucuuugacaugauauca      uga     a 
   cuAG AC CUC CUUAA      AAGCuuuu ggguu gagau                                                             gagcuu   ugacc a
   |||| || ||| |||||      |||||||| ||||| |||||                                                             ||||||   |||||  
   gauu ug ggg gaguu      uucgagaa cccga cuuug                                                             cuugag   acugg g
---    g  u   g     --cacu        a     a     aacguguccgaguguaauggaacacgaauuaaaauaguuuauuuaucccuaccacucuaag      --c     c 

Annotation confidence Not enough data

Genome context

CM000349.2: 7623433-7623627 [-]

Mature ptc-miR481c

• Accession: MIMAT0002100
• Description: Populus trichocarpa ptc-miR481c mature miRNA
• Sequence: 6 - AGGACCUCACUUAACAGCUUAAGC - 29
• Evidence: experimental ; PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203