Stem-loop ptc-MIR481d

Accession

MI0002396

Description

Populus trichocarpa ptc-MIR481d precursor miRNA

Gene family

MIPF0000131; MIR481

Literature search

1 open access papers mention ptc-MIR481d
(1 sentences)

Sequence

auccuAGGACCUCACCUAACAGCUUAAGCuauuggguugagaugauucuuugacaugguaucagagccuugaugaccaaguggucacgaguucgaaucucaccacuccuauuuauuugauaaaaaucaagcacaagguaaugugggccuaugcaaguuucaagcccaaagagcuuucacuugaggggguguauuag
...((((.(((((.(((...((...(((((.((((((((((((......(((.(((((.....((((.(((.(((((....))))))))))))....(((((....(((.....((((((....))))))....)))....))))).))))))))))))).)))))))..)))))...))..)))))).)).))))

Structure

auc    G  -   A   AAC  CUU     -a       -     gauucu   a     uaucagagccuugaugaccaaguggucacgaguucgaau     cacu   auuua      a 
   cuAG AC CUC CCU   AG   AAGCu  uuggguu gagau      uug caugg                                       cucac    ccu     uuugau a
   |||| || ||| |||   ||   |||||  ||||||| |||||      ||| |||||                                       |||||    |||     ||||||  
   gauu ug ggg gga   uc   uucga  aacccga cuuug      aac guauc                                       gggug    gga     gaacua a
---    a  u   -   -gu  acu     ga       a     ------   -     --------------------------------------c     uaau   -acac      a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR481d

• Accession: MIMAT0002102
• Description: Populus trichocarpa ptc-miR481d mature miRNA
• Sequence: 6 - AGGACCUCACCUAACAGCUUAAGC - 29
• Evidence: experimental ; PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203